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jquery - Running Javascript in new window.open

I'm running this function to open a new window.

function htmlNewWindow(id) {
    var html = $(id).html();
    var newWindow = window.open('');
    newWindow.document.body.innerHTML =  '<html><head><title>Hi</title>  <script src="js/myScript.js"></script> </head>' + html;    
}

This successfully creates a new window with the HTML in it. I have a bunch of HTML tags which when clicked run a function called Foo1. I've tried printing the entire function of Foo1 to the new HTML document, and tried putting Foo1 inside myScript.js. I see both Foo1 inside a script tag in the new window, and but neither are loaded since they are just written to the new page as HTML.

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Scripts added with .innerHTML aren't executed. You need to create a script node and append it to the window's DOM.

$("#button").click(newWindow);

function newWindow(id) {
  var html = $(id).html();
  var win = window.open('');
  win.document.head.innerHTML = '<title>Hi</title></head>';
  win.document.body.innerHTML = '<body>' + html + '</body>';
  var script = document.createElement('script');
  script.src = 'js/myScript.js';
  win.document.head.appendChild(script);
}
<script src="https://ajax.googleapis.com/ajax/libs/jquery/2.1.1/jquery.min.js"></script>
<button id="button">Click me</button>

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