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video - Convert mov with Alpha to VP9 Webm with Alpha Using ffmpeg

I am trying to convert a mov with alpha transparency to webm with alpha transparency, as seen here. I followed the steps explained here to no avail.

From this answer I was able to remove all the black in the video, thus making it transparent but this is not what I need as I already have a transparent mov and would like to convert that to transparent webm format.

ffmpeg -i input.mp4 -c:v libvpx -vf "colorkey=0x000000:0.1:0.1,format=yuva420p" out.webm

This is the ffprobe output of the video I would like to convert to webm with transparency.

built with Apple LLVM version 7.0.2 (clang-700.1.81)
  configuration: --prefix=/usr/local/Cellar/ffmpeg/2.8.4 --enable-shared --enable-pthreads --enable-gpl --enable-version3 --enable-hardcoded-tables --enable-avresample --cc=clang --host-cflags= --host-ldflags= --enable-opencl --enable-libx264 --enable-libmp3lame --enable-libvo-aacenc --enable-libxvid --enable-libfreetype --enable-libtheora --enable-libvorbis --enable-libvpx --enable-librtmp --enable-libopencore-amrnb --enable-libopencore-amrwb --enable-libass --enable-ffplay --enable-libspeex --enable-libschroedinger --enable-libfdk-aac --enable-libopus --enable-frei0r --enable-libopenjpeg --disable-decoder=jpeg2000 --extra-cflags=-I/usr/local/Cellar/openjpeg/1.5.2_1/include/openjpeg-1.5 --enable-nonfree --enable-vda
  libavutil      54. 31.100 / 54. 31.100
  libavcodec     56. 60.100 / 56. 60.100
  libavformat    56. 40.101 / 56. 40.101
  libavdevice    56.  4.100 / 56.  4.100
  libavfilter     5. 40.101 /  5. 40.101
  libavresample   2.  1.  0 /  2.  1.  0
  libswscale      3.  1.101 /  3.  1.101
  libswresample   1.  2.101 /  1.  2.101
  libpostproc    53.  3.100 / 53.  3.100
Input #0, mov,mp4,m4a,3gp,3g2,mj2, from 'input.mov':
  Metadata:
    major_brand     : qt
    minor_version   : 0
    compatible_brands: qt
    creation_time   : 2016-01-17 16:04:07
    encoder         : Mac OS X v? (AVF 1046.9.1, CM 1731.15.20, x86_64)
    encoder-eng     : Mac OS X v? (AVF 1046.9.1, CM 1731.15.20, x86_64)
  Duration: 00:00:06.63, start: 0.000000, bitrate: 63966 kb/s
    Stream #0:0(eng): Video: prores (ap4h / 0x68347061), yuva444p10le(bt470bg/smpte240m/bt709), 1920x1080, 63963 kb/s, 25.03 fps, 25 tbr, 600 tbn, 600 tbc (default)
    Metadata:
      creation_time   : 2016-01-17 16:04:07
      handler_name    : Core Media Data Handler
      encoder         : Apple ProRes 4444

I've also tried the following command which didn't work for me either.

ffmpeg -y -i input.mov -c:v libvpx-vp9 -b:v 2000k -pass 1 -an -f webm output.webm

I'm using version 2.8.4 of ffmpeg on a Mac, installed with brew. 2.8.5 is the latest version.

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Try

ffmpeg -i input.mov -c:v libvpx -pix_fmt yuva420p out.webm

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