system - Runge-Kutta code not converging with builtin method

Question

I am trying to implement the runge-kutta method to solve a Lotka-Volterra systtem, but the code (bellow) is not working properly. I followed the recomendations that I found in other topics of the StackOverflow, but the results do not converge with the builtin Runge-Kutta method, like rk4 method available in Pylab, for example. Someone could help me?

import matplotlib.pyplot as plt
import numpy as np
from pylab import *

def meurk4( f, x0, t ):
    n = len( t )
    x = np.array( [ x0 ] * n )    

    for i in range( n - 1 ):

        h =  t[i+1] - t[i]

        k1 = h * f( x[i], t[i] )
        k2 = h * f( x[i] + 0.5 * h * k1, t[i] + 0.5 * h )
        k3 = h * f( x[i] + 0.5 * h * k2, t[i] + 0.5 * h )
        k4 = h * f( x[i] + h * k3, t[i] + h)

        x[i+1] = x[i] + ( k1 + 2 * ( k2 + k3 ) + k4 ) * 6**-1 

    return x

def model(state,t):

    x,y = state     

    a = 0.8
    b = 0.02
    c = 0.2
    d = 0.004
    k = 600

    return np.array([ x*(a*(1-x*k**-1)-b*y) , -y*(c - d*x) ]) # corresponds to [dx/dt, dy/dt]

# initial conditions for the system
x0 = 500
y0 = 200

# vector of time
t = np.linspace( 0, 50, 100 )

result = meurk4( model, [x0,y0], t )
print result

plt.plot(t,result)

plt.xlabel('Time')
plt.ylabel('Population Size')
plt.legend(('x (prey)','y (predator)'))
plt.title('Lotka-Volterra Model')
plt.show()

---

I just updated the code following the comments. So, the function meurk4:

def meurk4( f, x0, t ):
        n = len( t )
        x = np.array( [ x0 ] * n )    

        for i in range( n - 1 ):

            h =  t[i+1] - t[i]

            k1 = h * f( x[i], t[i] )
            k2 = h * f( x[i] + 0.5 * h * k1, t[i] + 0.5 * h )
            k3 = h * f( x[i] + 0.5 * h * k2, t[i] + 0.5 * h )
            k4 = h * f( x[i] + h * k3, t[i] + h)

            x[i+1] = x[i] + ( k1 + 2 * ( k2 + k3 ) + k4 ) * 6**-1 

        return x

Becomes now (corrected):

def meurk4( f, x0, t ):
    n = len( t )
    x = np.array( [ x0 ] * n )    

    for i in range( n - 1 ):

        h =  t[i+1] - t[i]

        k1 = f( x[i], t[i] )
        k2 = f( x[i] + 0.5 * h * k1, t[i] + 0.5 * h )
        k3 = f( x[i] + 0.5 * h * k2, t[i] + 0.5 * h )
        k4 = f( x[i] + h * k3, t[i] + h)

        x[i+1] = x[i] + ( k1 + 2 * ( k2 + k3 ) + k4 ) * (h/6)

    return x

Nevertheless, the results is the following:

enter image description here

While the buitin method rk4 (from Pylab) results the following:

enter image description here

So, certainly my code still is not correct, as its results are not the same of the builtin rk4 method. Please, someone can help me?

Answer 1

You are doing a very typical error,see for instance How to pass a hard coded differential equation through Runge-Kutta 4 or here Error in RK4 algorithm in Python

It is either

k2 = f( x+0.5*h*k1, t+0.5*h )
...
x[i+1]=x[i]+(k1+2*(k2+k3)+k4)*(h/6)

or

k2 = h*f( x+0.5*k1, t+0.5*h )

and so on, with x[i+1] as it was, but not both variants at the same time.

---

Update: A more insidious error is the inferred type of the initial values and in consequence of the array of x vectors. By the original definition, both are integers, and thus

x = np.array( [ x0 ] * n )    

creates a list of integer vectors. Thus the update step

    x[i+1] = x[i] + ( k1 + 2 * ( k2 + k3 ) + k4 ) * (h/6)

will always round to integer. And since there is a phase where both values fall below 1, the integration stabilizes at zero. Thus modify to

# initial conditions for the system
x0 = 500.0
y0 = 200.0

to avoid that problem.