Welcome to OGeek Q&A Community for programmer and developer-Open, Learning and Share
Welcome To Ask or Share your Answers For Others

Categories

0 votes
316 views
in Technique[技术] by (71.8m points)

parallel processing - Is it possible to speed up a quicksort with par in Haskell?

I have got this seemingly trivial parallel quicksort implementation, the code is as follows:

import System.Random
import Control.Parallel
import Data.List

quicksort :: Ord a => [a] -> [a]
quicksort xs = pQuicksort 16 xs -- 16 is the number of sparks used to sort

-- pQuicksort, parallelQuicksort  
-- As long as n > 0 evaluates the lower and upper part of the list in parallel,
-- when we have recursed deep enough, n==0, this turns into a serial quicksort.
pQuicksort :: Ord a => Int -> [a] -> [a]
pQuicksort _ [] = []
pQuicksort 0 (x:xs) =
  let (lower, upper) = partition (< x) xs
  in pQuicksort 0 lower ++ [x] ++ pQuicksort 0 upper
pQuicksort n (x:xs) =
  let (lower, upper) = partition (< x) xs
      l = pQuicksort (n `div` 2) lower
      u = [x] ++ pQuicksort (n `div` 2) upper
  in (par u l) ++ u

main :: IO ()
main = do
  gen <- getStdGen
  let randints = (take 5000000) $ randoms gen :: [Int]
  putStrLn . show . sum $ (quicksort randints)

I compile with

ghc --make -threaded -O2 quicksort.hs

and run with

./quicksort +RTS -N16 -RTS

No matter what I do I can not get this to run faster than a simple sequential implementation running on one cpu.

  1. Is it possible to explain why this runs so much slower on several CPUs than on one?
  2. Is it possible to make this scale, at least sub linearly, with the number of CPUs by doing some trick?

EDIT: @tempestadept hinted that quick sort it self is the problem. To check this I implemented a simple merge sort in the same spirit as the example above. It has the same behaviour, performs slower the more capabilities you add.

import System.Random
import Control.Parallel

splitList :: [a] -> ([a], [a])
splitList = helper True [] []
  where helper _ left right [] = (left, right)
        helper True  left right (x:xs) = helper False (x:left) right xs
        helper False left right (x:xs) = helper True  left (x:right) xs

merge :: (Ord a) => [a] -> [a] -> [a]
merge xs [] = xs
merge [] ys = ys
merge (x:xs) (y:ys) = case x<y of
  True  -> x : merge xs (y:ys)
  False -> y : merge (x:xs) ys

mergeSort :: (Ord a) => [a] -> [a]
mergeSort xs = pMergeSort 16 xs -- we use 16 sparks

-- pMergeSort, parallel merge sort. Takes an extra argument
-- telling how many sparks to create. In our simple test it is
-- set to 16
pMergeSort :: (Ord a) => Int -> [a] -> [a]
pMergeSort _ [] = []
pMergeSort _ [a] = [a]
pMergeSort 0 xs =
  let (left, right) = splitList xs
  in  merge (pMergeSort 0 left) (pMergeSort 0 right)
pMergeSort n xs =
  let (left, right) = splitList xs
      l = pMergeSort (n `div` 2) left
      r = pMergeSort (n `div` 2) right
  in  (r `par` l) `pseq` (merge l r)

ris :: Int -> IO [Int]
ris n = do
  gen <- getStdGen
  return . (take n) $ randoms gen

main = do
  r <- ris 100000
  putStrLn . show . sum $ mergeSort r
See Question&Answers more detail:os

与恶龙缠斗过久,自身亦成为恶龙;凝视深渊过久,深渊将回以凝视…
Welcome To Ask or Share your Answers For Others

1 Reply

0 votes
by (71.8m points)

There are couple of problems that have already been mentioned:

  • Using lists is not going to give the performance you are looking for. Even this sample implementation using vector is factor x50 faster than using lists, since it does in-place element swaps. For this reason my answer will include implementation using the array library massiv, rather than lists.
  • I tend to find Haskell scheduler far from perfect for CPU bound tasks, so, as @Edward Kmett noted in his answer, we need a work stealing scheduler, which I conveniently implemented for the above mentioned library: scheduler
-- A helper function that partitions a region of a mutable array.
unstablePartitionRegionM ::
     forall r e m. (Mutable r Ix1 e, PrimMonad m)
  => MArray (PrimState m) r Ix1 e
  -> (e -> Bool)
  -> Ix1 -- ^ Start index of the region
  -> Ix1 -- ^ End index of the region
  -> m Ix1
unstablePartitionRegionM marr f start end = fromLeft start (end + 1)
  where
    fromLeft i j
      | i == j = pure i
      | otherwise = do
        x <- A.unsafeRead marr i
        if f x
          then fromLeft (i + 1) j
          else fromRight i (j - 1)
    fromRight i j
      | i == j = pure i
      | otherwise = do
        x <- A.unsafeRead marr j
        if f x
          then do
            A.unsafeWrite marr j =<< A.unsafeRead marr i
            A.unsafeWrite marr i x
            fromLeft (i + 1) j
          else fromRight i (j - 1)
{-# INLINE unstablePartitionRegionM #-}

Here is the actual in-place quicksort

quicksortMArray ::
     (Ord e, Mutable r Ix1 e, PrimMonad m)
  => Int
  -> (m () -> m ())
  -> A.MArray (PrimState m) r Ix1 e
  -> m ()
quicksortMArray numWorkers schedule marr =
  schedule $ qsort numWorkers 0 (unSz (msize marr) - 1)
  where
    qsort n !lo !hi =
      when (lo < hi) $ do
        p <- A.unsafeRead marr hi
        l <- unstablePartitionRegionM marr (< p) lo hi
        A.unsafeWrite marr hi =<< A.unsafeRead marr l
        A.unsafeWrite marr l p
        if n > 0
          then do
            let !n' = n - 1
            schedule $ qsort n' lo (l - 1)
            schedule $ qsort n' (l + 1) hi
          else do
            qsort n lo (l - 1)
            qsort n (l + 1) hi
{-# INLINE quicksortMArray #-}

Now if we look at the arguments numWorkers and schedule they are pretty opaque. Say if we supply 1 for the first argument and id for the second one, we will simply have a sequential quicksort, but if we would have a function available to us that could schedule each task to be computed concurrently, then we would get a parallel implementation of a quicksort. Luckily for us massiv provides it out of the box withMArray:

withMArray ::
     (Mutable r ix e, MonadUnliftIO m)
  => Array r ix e
  -> (Int -> (m () -> m ()) -> MArray RealWorld r ix e -> m a)
  -> m (Array r ix e)

Here is a pure version that will make a copy of an array and than sort it in palce using the computation strategy specified within the array itself:

quicksortArray :: (Mutable r Ix1 e, Ord e) => Array r Ix1 e -> Array r Ix1 e
quicksortArray arr = unsafePerformIO $ withMArray arr quicksortMArray
{-# INLINE quicksortArray #-}

Here comes the best part, the benchmarks. The order of results:

  • Intro sort from vector-algorithms
  • In-place quicksort using vector from this answer
  • Implementation in C, which I grabbed from this question
  • Sequential quicksort using massiv
  • Same as above, but in parallel on a computer with a humble 3rd gen i7 quad core processor with hyperthreading
benchmarking QuickSort/Vector Algorithms
time                 101.3 ms   (93.75 ms .. 107.8 ms)
                     0.991 R2   (0.974 R2 .. 1.000 R2)
mean                 97.13 ms   (95.17 ms .. 100.2 ms)
std dev              4.127 ms   (2.465 ms .. 5.663 ms)

benchmarking QuickSort/Vector  
time                 89.51 ms   (87.69 ms .. 91.92 ms)
                     0.999 R2   (0.997 R2 .. 1.000 R2)
mean                 92.67 ms   (91.54 ms .. 94.50 ms)
std dev              2.438 ms   (1.468 ms .. 3.493 ms)

benchmarking QuickSort/C       
time                 88.14 ms   (86.71 ms .. 89.41 ms)
                     1.000 R2   (0.999 R2 .. 1.000 R2)
mean                 90.11 ms   (89.17 ms .. 93.35 ms)
std dev              2.744 ms   (387.1 μs .. 4.686 ms)

benchmarking QuickSort/Array   
time                 76.07 ms   (75.77 ms .. 76.41 ms)
                     1.000 R2   (1.000 R2 .. 1.000 R2)
mean                 76.08 ms   (75.75 ms .. 76.28 ms)
std dev              453.7 μs   (247.8 μs .. 699.6 μs)

benchmarking QuickSort/Array Par
time                 25.25 ms   (24.84 ms .. 25.61 ms)
                     0.999 R2   (0.997 R2 .. 1.000 R2)
mean                 25.13 ms   (24.80 ms .. 25.75 ms)
std dev              991.6 μs   (468.5 μs .. 1.782 ms)

Benchmarks are sorting 1,000,000 random Int64s. If you'd like to see full code you can find it here: https://github.com/lehins/haskell-quicksort

To sum it up, we got a x3 time speed up on a quad core processor and 8 capabilities, which sounds pretty good to me. Thanks for this question, now I can add sorting function to massiv ;)

Edit

Note, that the accepted answer which uses lists instead of a more appropriate data structure for this problem such as a mutable array, is x100 times slower on the same input:

benchmarking List/random/List Par
time                 2.712 s    (2.566 s .. 3.050 s)
                     0.998 R2   (0.996 R2 .. 1.000 R2)
mean                 2.696 s    (2.638 s .. 2.745 s)
std dev              59.09 ms   (40.83 ms .. 72.04 ms)
variance introduced by outliers: 19% (moderately inflated)

与恶龙缠斗过久,自身亦成为恶龙;凝视深渊过久,深渊将回以凝视…
OGeek|极客中国-欢迎来到极客的世界,一个免费开放的程序员编程交流平台!开放,进步,分享!让技术改变生活,让极客改变未来! Welcome to OGeek Q&A Community for programmer and developer-Open, Learning and Share
Click Here to Ask a Question

...