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git - github changes not staged for commit

I have a very basic github setup with a readme, a directory, and another directory inside it with an html file. On github I can only view the readme and the first folder but none of its contents, and I am getting this message

tc349 ryntc3$ git add *
tc349 ryntc3$ git status
On branch master
Changes not staged for commit:
(use "git add <file>..." to update what will be committed)
(use "git checkout -- <file>..." to discard changes in working directory)
(commit or discard the untracked or modified content in submodules) 

modified:   week1 (modified content)

no changes added to commit (use "git add" and/or "git commit -a")

I feel like if I am adding all to be staged that it should not be an issue. Any help?

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Have you tried

git add .

This recurses into sub-directories, whereas I don't think * does.

See here


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