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ggplot2 - Produce an inset in each facet of an R ggplot while preserving colours of the original facet content

I would like to produce a graphic combining four facets of a graph with insets in each facet showing a detail of the respective plot. This is one of the things I tried:

    #create data frame

n_replicates <- c(rep(1:10,15),rep(seq(10,100,10),15),rep(seq(100,1000,100),15),rep(seq(1000,10000,1000),15))
sim_years <- rep(sort(rep((1:15),10)),4)
sd_data <- rep (NA,600)
for (i in 1:600) {
sd_data[i]<-rnorm(1,mean=exp(0.1 * sim_years[i]), sd= 1/n_replicates[i])
}
max_rep <- sort(rep(c(10,100,1000,10000),150))
data_frame <- cbind.data.frame(n_replicates,sim_years,sd_data,max_rep)


#do first basic plot
library(ggplot2)
plot1<-ggplot(data=data_frame, aes(x=sim_years,y=sd_data,group =n_replicates, col=n_replicates)) + 
  geom_line() + theme_bw() +
  labs(title ="",  x = "year", y = "sd")
plot1


#make four facets
my_breaks = c(2, 10, 100, 1000, 10000)
facet_names <- c(
  `10` = "2, 3, ..., 10 replicates",
  `100` = "10, 20, ..., 100 replicates",
  `1000` = "100, 200, ..., 1000 replicates",
  `10000` = "1000, 2000, ..., 10000 replicates"
)
plot2 <- plot1 + 
  facet_wrap( ~ max_rep, ncol=2, labeller = as_labeller(facet_names)) + 
  scale_colour_gradientn(name = "number of replicates", trans = "log",
                         breaks = my_breaks, labels = my_breaks, colours = rainbow(20))
plot2


#extract inlays (this is where it goes wrong I think)
library(ggpmisc)
library(tibble)
library(dplyr)
inset <- tibble(x = 0.01, y = 10.01,
                    plot = list(plot2 +
                                  facet_wrap( ~ max_rep, ncol=2, labeller = as_labeller(facet_names)) +
                                  coord_cartesian(xlim = c(13, 15),
                                                  ylim = c(3, 5)) +
                                  labs(x = NULL, y = NULL, color = NULL) +
                                  scale_colour_gradient(guide = FALSE) + 
                                  theme_bw(10)))

plot3 <- plot2 +
  expand_limits(x = 0, y = 0) +
  geom_plot_npc(data = inset, aes(npcx = x, npcy = y, label = plot)) + 
  annotate(geom = "rect", 
           xmin = 13, xmax = 15, ymin = 3, ymax = 5,
           linetype = "dotted", fill = NA, colour = "black") 

plot3

That leads to the following graphic: plot3

As you can see, the colours in the insets are wrong, and all four of them appear in each of the facets even though I only want the corresponding inset of course. I read through a lot of questions here (to even get me this far) and also some examples in the ggpmisc user guide but unfortunately I am still a bit lost on how to achieve what I want. Except maybe to do it by hand extracting four insets and then combining them with plot2. But I hope there will be a better way to do this. Thank you for your help!

Edit: better graphic now thanks to this answer, but problem remains partially unsolved:

The following code does good insets, but unfortunately the colours are not preserved. As in the above version each inset does its own rainbow colours anew instead of inheriting the partial rainbow scale from the facet it belongs to. Does anyone know why and how I could change this? In comments I put another (bad) attempt at solving this, it preserves the colors but has the problem of putting all four insets in each facet.

library(ggpmisc)
library(tibble)
library(dplyr)

# #extract inlays: good colours, but produces four insets.
# fourinsets <- tibble(#x = 0.01, y = 10.01,
#                      x = c(rep(0.01, 4)), 
#                      y = c(rep(10.01, 4)), 
#                     plot = list(plot2 +
#                                   facet_wrap( ~ max_rep, ncol=2) +
#                                   coord_cartesian(xlim = c(13, 15),
#                                                   ylim = c(3, 5)) +
#                                   labs(x = NULL, y = NULL, color = NULL) +
#                                   scale_colour_gradientn(name = "number of replicates", trans = "log", guide = FALSE,
#                                                          colours = rainbow(20)) +
#                                   theme(
#                                     strip.background = element_blank(),
#                                     strip.text.x = element_blank()
#                                   )
#                                 ))
# fourinsets$plot

library(purrr)
pp <- map(unique(data_frame$max_rep), function(x) {
  
  plot2$data <- plot2$data %>% filter(max_rep == x)
  plot2 + 
    coord_cartesian(xlim = c(12, 14),
                    ylim = c(3, 4)) +
    labs(x = NULL, y = NULL) +
    theme(
      strip.background = element_blank(),
      strip.text.x = element_blank(),
      legend.position = "none",
      axis.text=element_blank(),
      axis.ticks=element_blank()
    )
})
#pp[[2]]

inset_new <- tibble(x = c(rep(0.01, 4)), 
                    y = c(rep(10.01, 4)), 
                plot = pp, 
                max_rep = unique(data_frame$max_rep))

final_plot <- plot2 + 
  geom_plot_npc(data = inset_new, aes(npcx = x, npcy = y, label = plot, vp.width = 0.3, vp.height =0.6)) +
  annotate(geom = "rect", 
           xmin = 12, xmax = 14, ymin = 3, ymax = 4,
           linetype = "dotted", fill = NA, colour = "black") 


#final_plot

final_plot then looks like this:

final_plot: good inlays with wrong colours

I hope this clarifies the problem a bit. Any ideas are very welcome :)

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1 Reply

0 votes
by (71.8m points)

Modifying off @user63230's excellent answer:

pp <- map(unique(data_frame$max_rep), function(x) {  
  plot2 + 
    aes(alpha = ifelse(max_rep == x, 1, 0)) +
    coord_cartesian(xlim = c(12, 14),
                    ylim = c(3, 4)) +
    labs(x = NULL, y = NULL) +
    scale_alpha_identity() +
    facet_null() +
    theme(
      strip.background = element_blank(),
      strip.text.x = element_blank(),
      legend.position = "none",
      axis.text=element_blank(),
      axis.ticks=element_blank()
    )
})

Explanation:

  1. Instead of filtering the data passed into plot2 (which affects the mapping of colours), we impose a new aesthetic alpha, where lines belonging to the other replicate numbers are assigned 0 for transparency;
  2. Use scale_alpha_identity() to tell ggplot that the alpha mapping is to be used as-is: i.e. 1 for 100%, 0 for 0%.
  3. Add facet_null() to override plot2's existing facet_wrap, which removes the facet for the inset.

plot

Everything else is unchanged from the code in the question.


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