本文整理汇总了Python中astra.create_projector函数的典型用法代码示例。如果您正苦于以下问题:Python create_projector函数的具体用法?Python create_projector怎么用?Python create_projector使用的例子?那么恭喜您, 这里精选的函数代码示例或许可以为您提供帮助。
在下文中一共展示了create_projector函数的20个代码示例,这些例子默认根据受欢迎程度排序。您可以为喜欢或者感觉有用的代码点赞,您的评价将有助于我们的系统推荐出更棒的Python代码示例。
示例1: recon_sirt_fbp
def recon_sirt_fbp(im, angles, iter, temppath ):
"""Reconstruct a sinogram with the SIRT-FBP algorithm (Pelt, 2015).
Parameters
----------
im : array_like
Sinogram image data as numpy array.
iter : int
Number of iterations to be used for the computation of SIRT filter.
angles : double
Value in radians representing the number of angles of the input sinogram.
"""
# Create ASTRA geometries:
vol_geom = astra.create_vol_geom(im.shape[1] , im.shape[1])
proj_geom = astra.create_proj_geom('parallel', 1.0, im.shape[1], linspace(0,angles,im.shape[0],False))
proj = astra.create_projector('cuda', proj_geom, vol_geom)
p = astra.OpTomo(proj)
# Register plugin with ASTRA
astra.plugin.register(sirtfbp.plugin)
# Create the ASTRA projector
im_rec = p.reconstruct('SIRT-FBP',im, iter, extraOptions={'filter_dir':temppath})
return im_rec.astype(float32)
开发者ID:ElettraSciComp,项目名称:STP-Core,代码行数:28,代码来源:rec_sirt_fbp.py
示例2: astra_rec_cpu
def astra_rec_cpu(tomo, center, recon, theta, vol_geom, niter, proj_type, opts):
# Lazy import ASTRA
import astra as astra_mod
nslices, nang, ndet = tomo.shape
cfg = astra_mod.astra_dict(opts['method'])
if 'extra_options' in opts:
cfg['option'] = opts['extra_options']
proj_geom = astra_mod.create_proj_geom('parallel', 1.0, ndet, theta.astype(np.float64))
pid = astra_mod.create_projector(proj_type, proj_geom, vol_geom)
sino = np.zeros((nang, ndet), dtype=np.float32)
sid = astra_mod.data2d.link('-sino', proj_geom, sino)
cfg['ProjectorId'] = pid
cfg['ProjectionDataId'] = sid
for i in range(nslices):
shft = int(np.round(ndet / 2. - center[i]))
if not shft == 0:
sino[:] = np.roll(tomo[i], shft)
l = shft
r = ndet + shft
if l < 0:
l = 0
if r > ndet:
r = ndet
sino[:, :l] = 0
sino[:, r:] = 0
else:
sino[:] = tomo[i]
vid = astra_mod.data2d.link('-vol', vol_geom, recon[i])
cfg['ReconstructionDataId'] = vid
alg_id = astra_mod.algorithm.create(cfg)
astra_mod.algorithm.run(alg_id, niter)
astra_mod.algorithm.delete(alg_id)
astra_mod.data2d.delete(vid)
astra_mod.data2d.delete(sid)
astra_mod.projector.delete(pid)
开发者ID:michael-sutherland,项目名称:tomopy,代码行数:35,代码来源:wrappers.py
示例3: bp0
def bp0(sino, det_col=111, num_angles=222, voxel_size_mm=1):
"""Wrapper for astra forward projector
:param sino:
:param projector_id:
:return: backprojected sinogram
"""
vol_geom = astra.create_vol_geom(sino.shape)
proj_id = astra.create_projector(
'cuda',
astra.create_proj_geom('parallel', 1.0, det_col,
np.linspace(0, np.pi, num_angles, False)),
vol_geom)
rec_id, backprojection = astra.create_backprojection(sino * voxel_size_mm,
proj_id)
# rec_id, backprojection = astra.create_backprojection(sino, projector_id)
# backprojection /= sino.shape[0]
# backprojection *= np.pi
astra.data2d.delete(rec_id)
astra.projector.delete(proj_id)
return backprojection
开发者ID:moosmann,项目名称:astra,代码行数:27,代码来源:projector_scaling.py
示例4: astra_rec_cuda
def astra_rec_cuda(tomo, center, recon, theta, vol_geom, niter, proj_type, gpu_index, opts):
# Lazy import ASTRA
import astra as astra_mod
nslices, nang, ndet = tomo.shape
cfg = astra_mod.astra_dict(opts['method'])
if 'extra_options' in opts:
# NOTE: we are modifying 'extra_options' and so need to make a copy
cfg['option'] = copy.deepcopy(opts['extra_options'])
else:
cfg['option'] = {}
if gpu_index is not None:
cfg['option']['GPUindex'] = gpu_index
oc = None
const_theta = np.ones(nang)
proj_geom = astra_mod.create_proj_geom(
'parallel', 1.0, ndet, theta.astype(np.float64))
for i in range(nslices):
if center[i] != oc:
oc = center[i]
proj_geom['option'] = {
'ExtraDetectorOffset':
(center[i] - ndet / 2.) * const_theta}
pid = astra_mod.create_projector(proj_type, proj_geom, vol_geom)
cfg['ProjectorId'] = pid
sid = astra_mod.data2d.link('-sino', proj_geom, tomo[i])
cfg['ProjectionDataId'] = sid
vid = astra_mod.data2d.link('-vol', vol_geom, recon[i])
cfg['ReconstructionDataId'] = vid
alg_id = astra_mod.algorithm.create(cfg)
astra_mod.algorithm.run(alg_id, niter)
astra_mod.algorithm.delete(alg_id)
astra_mod.data2d.delete(vid)
astra_mod.data2d.delete(sid)
astra_mod.projector.delete(pid)
开发者ID:tomopy,项目名称:tomopy,代码行数:34,代码来源:wrappers.py
示例5: pid
def pid(number_of_angles):
"""Return projector ID.
:param number_of_angles:
:return:
"""
return astra.create_projector('cuda', astra.create_proj_geom('parallel',
1.0, vshape[0], np.linspace(0, np.pi, number_of_angles, False)), vol_geom)
开发者ID:moosmann,项目名称:astra,代码行数:7,代码来源:projector_scaling.py
示例6: run
def run(self, iterations):
self.fn = getFilterFile(self.fd, self.pg, iterations, self.rg, self.osz)
if os.path.exists(self.fn):
flt = np.load(self.fn)
self.v[:] = self.customFBP(flt)
return
nd = self.nd
if self.osz:
nds = self.osz
else:
nds = nd
na = len(self.ang)
pgc = astra.create_proj_geom('parallel',1.0,nd,self.ang)
vgc = astra.create_vol_geom((nds,nds))
pidc = astra.create_projector('strip',pgc,vgc)
x = np.zeros((nds,nds))
xs = np.zeros((nds,nds))
sf = np.zeros((na,nd))
vid = astra.data2d.create('-vol',vgc)
sid = astra.data2d.create('-sino',pgc)
cfg = astra.astra_dict('FP')
cfg['ProjectorId']=pidc
cfg['ProjectionDataId']=sid
cfg['VolumeDataId']=vid
fpid = astra.algorithm.create(cfg)
cfg = astra.astra_dict('BP')
cfg['ProjectorId']=pidc
cfg['ProjectionDataId']=sid
cfg['ReconstructionDataId']=vid
bpid = astra.algorithm.create(cfg)
vc = astra.data2d.get_shared(vid)
sc = astra.data2d.get_shared(sid)
x[nds//2,nds//2]=1
alp = 1./(na*nds)
if self.rg:
if self.rg*alp >=0.1:
alp = 0.1/self.rg
astra.log.info('Computing filter...')
for i in range(iterations):
if i%10==0: astra.log.info('{:.2f} % done'.format(100*float(i)/iterations))
xs+=x
vc[:] = x
astra.algorithm.run(fpid)
astra.algorithm.run(bpid)
if self.rg:
dx = x[:-1,:] - x[1:,:]
dy = x[:,:-1] - x[:,1:]
x[:-1,:] -= self.rg*dx*alp
x[1:,:] += self.rg*dx*alp
x[:,:-1] -= self.rg*dy*alp
x[:,1:] += self.rg*dy*alp
x -= vc*alp
vc[:] = xs
astra.algorithm.run(fpid)
flt = sc.copy()*alp
astra.algorithm.delete([fpid,bpid])
astra.algorithm.delete([vid,sid])
np.save(self.fn,flt)
self.v[:] = self.customFBP(flt)
astra.projector.delete(pidc)
开发者ID:dmpelt,项目名称:pysirtfbp,代码行数:60,代码来源:astra_plugin.py
示例7: astrafp
def astrafp(im, ang, prj="cuda"):
proj_geom = astra.create_proj_geom("parallel", 1.0, im.shape[0], np.array([ang, 0]))
vol_geom = astra.create_vol_geom(im.shape)
pid = astra.create_projector(prj, proj_geom, vol_geom)
w = astra.OpTomo(pid)
fpim = w * im
astra.projector.delete(pid)
return fpim[0 : im.shape[0]]
开发者ID:lorentz-phantom,项目名称:lorentz-phantom,代码行数:8,代码来源:forwproj.py
示例8: __init__
def __init__(self, n_pixels, n_angles, rayperdetec=None):
'''
Initialize the ASTRA toolbox with a simple parallel configuration.
The image is assumed to be square, and the detector count is equal to the number of rows/columns.
'''
self.vol_geom = astra.create_vol_geom(n_pixels, n_pixels)
self.proj_geom = astra.create_proj_geom('parallel', 1.0, n_pixels, np.linspace(0,np.pi,n_angles,False))
self.proj_id = astra.create_projector('cuda', self.proj_geom, self.vol_geom)
开发者ID:pierrepaleo,项目名称:ChambollePock,代码行数:8,代码来源:tomo_operators.py
示例9: reconstruct
def reconstruct(self, sinogram, centre_of_rotation, angles, shape, center):
ctr = centre_of_rotation
width = sinogram.shape[1]
pad = 50
sino = np.nan_to_num(sinogram)
# pad the array so that the centre of rotation is in the middle
alen = ctr
blen = width - ctr
mid = width / 2.0
if (ctr > mid):
plow = pad
phigh = (alen - blen) + pad
else:
plow = (blen - alen) + pad
phigh = pad
logdata = np.log(sino+1)
sinogram = np.pad(logdata, ((0, 0), (int(plow), int(phigh))),
mode='reflect')
width = sinogram.shape[1]
vol_geom = astra.create_vol_geom(shape[0], shape[1])
proj_geom = astra.create_proj_geom('parallel', 1.0, width,
np.deg2rad(angles))
sinogram_id = astra.data2d.create("-sino", proj_geom, sinogram)
# Create a data object for the reconstruction
rec_id = astra.data2d.create('-vol', vol_geom)
proj_id = astra.create_projector('strip', proj_geom, vol_geom)
cfg = astra.astra_dict(self.parameters['reconstruction_type'])
cfg['ReconstructionDataId'] = rec_id
cfg['ProjectionDataId'] = sinogram_id
cfg['ProjectorId'] = proj_id
# Create the algorithm object from the configuration structure
alg_id = astra.algorithm.create(cfg)
# Run 20 iterations of the algorithm
itterations = int(self.parameters['number_of_iterations'])
# This will have a runtime in the order of 10 seconds.
astra.algorithm.run(alg_id, itterations)
# Get the result
rec = astra.data2d.get(rec_id)
# Clean up.
astra.algorithm.delete(alg_id)
astra.data2d.delete(rec_id)
astra.data2d.delete(sinogram_id)
return rec
开发者ID:nicwade,项目名称:Savu,代码行数:57,代码来源:astra_recon.py
示例10: astra_reconstruction
def astra_reconstruction(self, sino, vol_geom, proj_geom):
# currently hard-coded - for 3D version only!
#sino = np.transpose(sino, (1, 0, 2))
self.sino_id = self.astra_function.create("-sino", proj_geom, sino)
# Create a data object for the reconstruction
self.rec_id = self.astra_function.create('-vol', vol_geom)
cfg = self.cfg_setup()
if self.alg_type is '2D' and not "CUDA" in self.name:
proj_id = astra.create_projector('strip', proj_geom, vol_geom)
cfg['ProjectorId'] = proj_id
return self.run_astra(cfg)
开发者ID:r-atwood,项目名称:Savu,代码行数:11,代码来源:base_astra_recon.py
示例11: _basic_par2d_fp
def _basic_par2d_fp(type):
import astra
import numpy as np
vg = astra.create_vol_geom(2, 32)
pg = astra.create_proj_geom('parallel', 1, 32, [0])
proj_id = astra.create_projector(type, pg, vg)
vol = np.random.rand(2, 32)
(sino_id, sino) = astra.create_sino(vol, proj_id)
astra.data2d.delete(sino_id)
astra.projector.delete(proj_id)
err = np.max(np.abs(sino[0,:] - np.sum(vol,axis=0)))
return err < 1e-6
开发者ID:astra-toolbox,项目名称:astra-toolbox,代码行数:12,代码来源:tests.py
示例12: set_config
def set_config(self, rec_id, sino_id, proj_geom, vol_geom):
cfg = astra.astra_dict(self.alg)
cfg['ReconstructionDataId'] = rec_id
cfg['ProjectionDataId'] = sino_id
if 'FBP' in self.alg:
fbp_filter = self.parameters['FBP_filter'] if 'FBP_filter' in \
self.parameters.keys() else 'none'
cfg['FilterType'] = fbp_filter
if 'projector' in self.parameters.keys():
proj_id = astra.create_projector(
self.parameters['projector'], proj_geom, vol_geom)
cfg['ProjectorId'] = proj_id
cfg = self.set_options(cfg)
return cfg
开发者ID:DiamondLightSource,项目名称:Savu,代码行数:14,代码来源:base_astra_recon.py
示例13: set_config
def set_config(self, rec_id, sino_id, proj_geom, vol_geom):
cfg = astra.astra_dict(self.alg)
cfg['ReconstructionDataId'] = rec_id
cfg['ProjectionDataId'] = sino_id
if 'FBP' in self.alg:
cfg['FilterType'] = self.parameters['FBP_filter']
if 'projector' in self.parameters.keys():
proj_id = astra.create_projector(
self.parameters['projector'], proj_geom, vol_geom)
cfg['ProjectorId'] = proj_id
# mask not currently working correctly for SIRT or SART algorithms
sirt_or_sart = [a for a in ['SIRT', 'SART'] if a in self.alg]
if self.mask_id and not sirt_or_sart:
cfg['option'] = {}
cfg['option']['ReconstructionMaskId'] = self.mask_id
cfg = self.set_options(cfg)
return cfg
开发者ID:FedeMPouzols,项目名称:Savu,代码行数:17,代码来源:base_astra_recon.py
示例14: geom_setup_2D
def geom_setup_2D(self, dim_det_cols):
in_pData = self.get_plugin_in_datasets()[0]
cor = self.cor + self.pad_amount
sino_shape = in_pData.get_shape()
nCols = sino_shape[dim_det_cols]
self.p_low, self.p_high = \
self.array_pad(cor[0], nCols + 2*self.pad_amount)
sino_width = \
sino_shape[1] + self.p_low + self.p_high + 2*self.pad_amount
vol_geom = astra.create_vol_geom(self.vol_shape[0], self.vol_shape[1])
self.proj_geom = astra.create_proj_geom('parallel', 1.0, sino_width,
np.deg2rad(self.angles))
self.rec_id = self.astra_function.create('-vol', vol_geom)
self.cfg = self.cfg_setup()
if self.alg_type is '2D' and "CUDA" not in self.name:
proj_id = astra.create_projector('strip', self.proj_geom, vol_geom)
self.cfg['ProjectorId'] = proj_id
开发者ID:rcatwood,项目名称:Savu,代码行数:20,代码来源:base_astra_recon.py
示例15: fp0
def fp0(image, det_col=111, num_angles=222, voxel_size_mm=1):
"""Wrapper for astra forward projector
:param image:
:return: sinogram
"""
vol_geom = astra.create_vol_geom(image.shape)
proj_id = astra.create_projector(
'cuda',
astra.create_proj_geom('parallel', 1.0, det_col,
np.linspace(0, np.pi, num_angles, False)),
vol_geom)
sino_id, sino = astra.create_sino(image, proj_id)
sino *= voxel_size_mm
astra.data2d.delete(sino_id)
astra.projector.delete(proj_id)
return sino
开发者ID:moosmann,项目名称:astra,代码行数:21,代码来源:projector_scaling.py
示例16: reconstruct2D
def reconstruct2D(self, sinogram, angles, shape, alg_name, iterations):
vol_geom = astra.create_vol_geom(shape[0], shape[1])
proj_geom = astra.create_proj_geom('parallel', 1.0, sinogram.shape[1],
np.deg2rad(angles))
sinogram_id = astra.data2d.create("-sino", proj_geom, sinogram)
# Create a data object for the reconstruction
rec_id = astra.data2d.create('-vol', vol_geom)
cfg = astra.astra_dict(alg_name)
cfg['ReconstructionDataId'] = rec_id
cfg['ProjectionDataId'] = sinogram_id
if not "CUDA" in alg_name:
proj_id = astra.create_projector('strip', proj_geom, vol_geom)
cfg['ProjectorId'] = proj_id
# Create the algorithm object from the configuration structure
alg_id = astra.algorithm.create(cfg)
# This will have a runtime in the order of 10 seconds.
astra.algorithm.run(alg_id, iterations)
if "CUDA" in alg_name and "FBP" not in alg_name:
self.res += astra.algorithm.get_res_norm(alg_id)**2
print math.sqrt(self.res)
# Get the result
rec = astra.data2d.get(rec_id)
astra.algorithm.delete(alg_id)
astra.data2d.delete(rec_id)
astra.data2d.delete(sinogram_id)
return rec
开发者ID:mjn19172,项目名称:Savu,代码行数:38,代码来源:base_astra_recon.py
示例17: astra_run
def astra_run(*args):
# Lazy import ASTRA
import astra as astra_mod
# Get shared arrays
tomo = mproc.SHARED_TOMO
recon = mproc.SHARED_ARRAY
# Unpack arguments
nang = args[0]
nslices = args[1]
ndet = args[2]
centers = args[3]
angles = args[4]
num_gridx = args[5]['num_gridx']
num_gridy = args[5]['num_gridy']
opts = args[5]['options']
istart = args[6]
iend = args[7]
# Check options
for o in needed_options['astra']:
if o not in opts:
logger.error("Option %s needed for ASTRA reconstruction." % (o,))
raise ValueError()
for o in default_options['astra']:
if o not in opts:
opts[o] = default_options['astra'][o]
# Create ASTRA geometries
vol_geom = astra_mod.create_vol_geom((num_gridx, num_gridy))
proj_geom = astra_mod.create_proj_geom(
'parallel', 1.0, ndet, angles.astype(np.float64))
# Create ASTRA data id
sino = np.zeros((nang, ndet), dtype=np.float32)
# Create ASTRA config
cfg = astra_mod.astra_dict(opts['method'])
if opts['proj_type'] != 'cuda':
pi = astra_mod.create_projector(opts['proj_type'], proj_geom, vol_geom)
sid = astra_mod.data2d.link('-sino', proj_geom, sino)
cfg['ProjectorId'] = pi
cfg['ProjectionDataId'] = sid
use_cuda = False
else:
use_cuda = True
if 'extra_options' in opts:
cfg['option'] = opts['extra_options']
else:
cfg['option'] = {}
# Perform reconstruction
for i in xrange(istart, iend):
sino[:] = tomo[:, i, :]
cfg['option']['z_id'] = i
# Fix center of rotation
if use_cuda:
proj_geom['option'] = {
'ExtraDetectorOffset':
(centers[i] - ndet / 2.) * np.ones(nang)}
sid = astra_mod.data2d.link('-sino', proj_geom, sino)
cfg['ProjectionDataId'] = sid
pi = astra_mod.create_projector(
opts['proj_type'], proj_geom, vol_geom)
cfg['ProjectorId'] = pi
else:
# Temporary workaround, will be fixed in later ASTRA version
shft = int(np.round(ndet / 2. - centers[i]))
sino[:] = np.roll(sino, shft)
l = shft
r = sino.shape[1] + shft
if l < 0:
l = 0
if r > sino.shape[1]:
r = sino.shape[1]
sino[:, 0:l] = 0
sino[:, r:sino.shape[1]] = 0
vid = astra_mod.data2d.link('-vol', vol_geom, recon[i])
cfg['ReconstructionDataId'] = vid
alg_id = astra_mod.algorithm.create(cfg)
astra_mod.algorithm.run(alg_id, opts['num_iter'])
astra_mod.algorithm.delete(alg_id)
astra_mod.data2d.delete(vid)
if use_cuda:
astra_mod.projector.delete(pi)
astra_mod.data2d.delete(sid)
# Clean up
if not use_cuda:
astra_mod.projector.delete(pi)
astra_mod.data2d.delete(sid)
开发者ID:habi,项目名称:tomopy,代码行数:97,代码来源:wrappers.py
示例18: __init__
def __init__(self, n_pixels, angles, rot_center=None, fullscan=False, super_sampling=None):
"""
Initialize the ASTRA toolbox with a simple parallel configuration.
The image is assumed to be square, and the detector count is equal to the number of rows/columns.
n_pixels: integer
number of pixels of one dimension of the image
angles : integer or numpy.ndarray
number of projection angles (if integer), or custom series of angles
rot_center : float
user-defined rotation center
fullscan : boolean
if True, use a 360 scan configuration
super_sampling : integer
Detector and Pixel supersampling
"""
if isinstance(n_pixels, int):
n_x, n_y = n_pixels, n_pixels
else: # assuming iterable
n_pixels = tuple(n_pixels)
n_x, n_y = n_pixels
angle_max = np.pi
if fullscan: angle_max *= 2
if isinstance(angles, int):
angles = np.linspace(0, angle_max, angles, False)
n_angles = angles.shape[0]
self.vol_geom = astra.create_vol_geom(n_x, n_y)
self.proj_geom = astra.create_proj_geom('parallel', 1.0, n_pixels, angles)
if rot_center:
o_angles = np.ones(n_angles) if isinstance(n_angles, int) else np.ones_like(n_angles)
self.proj_geom['option'] = {'ExtraDetectorOffset': (rot_center - n_x / 2.) * o_angles}
self.proj_id = astra.create_projector('cuda', self.proj_geom, self.vol_geom)
# vg : Volume geometry
self.vg = astra.projector.volume_geometry(self.proj_id)
# pg : projection geometry
self.pg = astra.projector.projection_geometry(self.proj_id)
# ---- Configure Projector ------
# sinogram shape
self.sshape = astra.functions.geom_size(self.pg)
# Configure projector
self.cfg_proj = astra.creators.astra_dict('FP_CUDA')
self.cfg_proj['ProjectorId'] = self.proj_id
if super_sampling:
self.cfg_proj['option'] = {'DetectorSuperSampling':super_sampling}
# ---- Configure Backprojector ------
# volume shape
self.vshape = astra.functions.geom_size(self.vg)
# Configure backprojector
self.cfg_backproj = astra.creators.astra_dict('BP_CUDA')
self.cfg_backproj['ProjectorId'] = self.proj_id
if super_sampling:
self.cfg_backproj['option'] = {'PixelSuperSampling':super_sampling}
# -------------------
self.rot_center = rot_center if rot_center else n_pixels/2
self.n_pixels = n_pixels
self.angles = angles
开发者ID:pierrepaleo,项目名称:portal,代码行数:62,代码来源:tomography.py
示例19: __init__
def __init__(self, slice_shape, angles, dwidth=None, rot_center=None, fullscan=False, cudafbp=False, super_sampling=None):
"""
Create a tomography parallel beam geometry.
Parameters
-----------
slice_shape: int or tuple
Shape of the slice. Can be in the form (n_x, n_y) or N.
If the argument is an integer N, the slice is assumed to be square of dimensions (N, N).
Mind that if providing (n_x, n_y), n_x is the number of columns of the image.
angles: integer or numpy.ndarray
Projection angles in radians.
If this argument is an integer, the projections angles are linear between [0, pi[ if fullscan=False,
or in [0, 2*pi[ if fullscan=True.
If this argument is a 1D array, this means that custom angles (in radians) are provided.
dwidth: (optional) integer
detector width (number of pixels). If not provided, max(n_x, n_y) is taken.
rot_center: (optional) float
user-defined rotation center. If not provided, dwidth/2 is taken.
fullscan: (optional) boolean, default is False
if True, use a 360 scan geometry.
cudafbp: (optionnal) boolean, default is False
If True, use the built-in FBP of ASTRA instead of using Python to filter the projections.
super_sampling: integer
Detector and Pixel supersampling
"""
if isinstance(slice_shape, int):
n_x, n_y = slice_shape, slice_shape
else:
slice_shape = tuple(slice_shape)
n_x, n_y = slice_shape
if dwidth is None: dwidth = max(n_x, n_y)
angle_max = np.pi
if fullscan: angle_max *= 2
if isinstance(angles, int):
angles = np.linspace(0, angle_max, angles, False)
n_angles = angles.shape[0]
self.vol_geom = astra.create_vol_geom(n_x, n_y)
self.proj_geom = astra.create_proj_geom('parallel', 1.0, dwidth, angles)
if rot_center:
o_angles = np.ones(n_angles) if isinstance(n_angles, int) else np.ones_like(n_angles)
self.proj_geom['option'] = {'ExtraDetectorOffset': (rot_center - n_x / 2.) * o_angles}
self.proj_id = astra.create_projector('cuda', self.proj_geom, self.vol_geom)
# vg : Volume geometry
self.vg = astra.projector.volume_geometry(self.proj_id)
# pg : projection geometry
self.pg = astra.projector.projection_geometry(self.proj_id)
# ---- Configure Projector ------
# sinogram shape
self.sshape = astra.functions.geom_size(self.pg)
# Configure projector
self.cfg_proj = astra.creators.astra_dict('FP_CUDA')
self.cfg_proj['ProjectorId'] = self.proj_id
if super_sampling:
self.cfg_proj['option'] = {'DetectorSuperSampling':super_sampling}
# ---- Configure Backprojector ------
# volume shape
self.vshape = astra.functions.geom_size(self.vg)
# Configure backprojector
if cudafbp:
self.cfg_backproj = astra.creators.astra_dict('FBP_CUDA')
self.cfg_backproj['FilterType'] = 'Ram-Lak'
else:
self.cfg_backproj = astra.creators.astra_dict('BP_CUDA')
self.cfg_backproj['ProjectorId'] = self.proj_id
if super_sampling:
self.cfg_backproj['option'] = {'PixelSuperSampling':super_sampling}
# -------------------
self.n_x = n_x
self.n_y = n_y
self.dwidth = dwidth
self.n_a = angles.shape[0]
self.rot_center = rot_center if rot_center else dwidth//2
self.angles = angles
self.cudafbp = cudafbp
if not(cudafbp):
_ramp = self.compute_ramp_filter(dwidth*2)*2.0
self.rampfilter = np.abs(np.fft.fft(_ramp))
else: self.rampfilter = None
开发者ID:pierrepaleo,项目名称:localtomo,代码行数:86,代码来源:tomography.py
示例20:
#along with PySIRT-FBP. If not, see <http://www.gnu.org/licenses/>.
#
#-----------------------------------------------------------------------
import sirtfbp
import phantom
import astra
import numpy as np
import os
nd = 256
na = 32
# Create ASTRA geometries
vol_geom = astra.create_vol_geom(nd,nd)
proj_geom = astra.create_proj_geom('parallel',1.0,nd,np.linspace(0,np.pi,na,False))
pi = astra.create_projector('linear', proj_geom, vol_geom) # change 'linear' to 'cuda' for GPU
p = astra.OpTomo(pi)
# Load the phantom from disk
testPhantom = phantom.phantom(nd)
# Calculate the forward projection of the phantom
testSino = (p*testPhantom).reshape((na,nd))
# Add some noise to the sinogram
testSino = astra.add_noise_to_sino(testSino,10**3)
# Register plugin with ASTRA
astra.plugin.register(sirtfbp.plugin)
# Reconstruct the image using SIRT-FBP, FBP, and SIRT.
开发者ID:decarlof,项目名称:tomopy-recipes,代码行数:31,代码来源:ASTRAExample.py
注:本文中的astra.create_projector函数示例整理自Github/MSDocs等源码及文档管理平台,相关代码片段筛选自各路编程大神贡献的开源项目,源码版权归原作者所有,传播和使用请参考对应项目的License;未经允许,请勿转载。 |
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